Differentially expressed genes in Populus simonii x Populus nigra in response to NaCl stress using cDNA-AFLP.
Identifieur interne : 002F26 ( Main/Exploration ); précédent : 002F25; suivant : 002F27Differentially expressed genes in Populus simonii x Populus nigra in response to NaCl stress using cDNA-AFLP.
Auteurs : Lei Wang [République populaire de Chine] ; Boru Zhou ; Lili Wu ; Baozhu Guo ; Tingbo JiangSource :
- Plant science : an international journal of experimental plant biology [ 1873-2259 ] ; 2011.
Descripteurs français
- KwdFr :
- ADN complémentaire (composition chimique), ADN complémentaire (génétique), Analyse de polymorphisme de longueur de fragments amplifiés (MeSH), Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ADN (MeSH), Chlorure de sodium (pharmacologie), Données de séquences moléculaires (MeSH), Feuilles de plante (effets des médicaments et des substances chimiques), Feuilles de plante (génétique), Gènes de plante (effets des médicaments et des substances chimiques), Populus (croissance et développement), Populus (effets des médicaments et des substances chimiques), Populus (génétique), RT-PCR (MeSH), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Stress physiologique (effets des médicaments et des substances chimiques), Séquence nucléotidique (MeSH).
- MESH :
- composition chimique : ADN complémentaire.
- croissance et développement : Populus.
- effets des médicaments et des substances chimiques : Feuilles de plante, Gènes de plante, Populus, Régulation de l'expression des gènes végétaux, Stress physiologique.
- génétique : ADN complémentaire, Feuilles de plante, Populus.
- pharmacologie : Chlorure de sodium.
- Analyse de polymorphisme de longueur de fragments amplifiés, Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Données de séquences moléculaires, RT-PCR, Séquence nucléotidique.
English descriptors
- KwdEn :
- Amplified Fragment Length Polymorphism Analysis (MeSH), Base Sequence (MeSH), DNA, Complementary (chemistry), DNA, Complementary (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (drug effects), Genes, Plant (drug effects), Molecular Sequence Data (MeSH), Plant Leaves (drug effects), Plant Leaves (genetics), Populus (drug effects), Populus (genetics), Populus (growth & development), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Sequence Analysis, DNA (MeSH), Sodium Chloride (pharmacology), Stress, Physiological (drug effects).
- MESH :
- chemical , chemistry : DNA, Complementary.
- chemical , genetics : DNA, Complementary.
- drug effects : Gene Expression Regulation, Plant, Genes, Plant, Plant Leaves, Populus, Stress, Physiological.
- genetics : Plant Leaves, Populus.
- growth & development : Populus.
- chemical , pharmacology : Sodium Chloride.
- Amplified Fragment Length Polymorphism Analysis, Base Sequence, Gene Expression Profiling, Molecular Sequence Data, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.
Abstract
Salinity is an important environmental factor limiting growth and productivity of plants, and affects almost every aspect of the plant physiology and biochemistry. The objective of this study was to apply cDNA-AFLP and to identify differentially expressed genes in response to NaCl stress vs. no-stress in Populus simonii x Populus nigra in order to develop genetic resources for genetic improvement. Selective amplification with 64 primer combinations allowed the visualization of 4407 transcript-derived fragments (TDFs), and 2027 were differentially expressed. Overall, 107 TDFs were re-sequenced successfully, and 86 unique sequences were identified in 10 functional categories based on their putative functions. A subset of these genes was selected for real-time PCR validation, which confirmed the differential expression patterns in the leaf tissues under NaCl stress vs. no stress. Differential expressed genes will be studied further for association with salt or drought-tolerance in P. simonii x P. nigra. This study suggests that cDNA-AFLP is a useful tool to serve as an initial step for characterizing transcriptional changes induced by NaCl salinity stress in P. simonii x P. nigra and provides resources for further study and application in genetic improvement and breeding. All unique sequences have been deposited in the Genbank as accession numbers GW672587-GW672672 for public use.
DOI: 10.1016/j.plantsci.2011.02.001
PubMed: 21497716
Affiliations:
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The objective of this study was to apply cDNA-AFLP and to identify differentially expressed genes in response to NaCl stress vs. no-stress in Populus simonii x Populus nigra in order to develop genetic resources for genetic improvement. Selective amplification with 64 primer combinations allowed the visualization of 4407 transcript-derived fragments (TDFs), and 2027 were differentially expressed. Overall, 107 TDFs were re-sequenced successfully, and 86 unique sequences were identified in 10 functional categories based on their putative functions. A subset of these genes was selected for real-time PCR validation, which confirmed the differential expression patterns in the leaf tissues under NaCl stress vs. no stress. Differential expressed genes will be studied further for association with salt or drought-tolerance in P. simonii x P. nigra. This study suggests that cDNA-AFLP is a useful tool to serve as an initial step for characterizing transcriptional changes induced by NaCl salinity stress in P. simonii x P. nigra and provides resources for further study and application in genetic improvement and breeding. All unique sequences have been deposited in the Genbank as accession numbers GW672587-GW672672 for public use.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21497716</PMID><DateCompleted><Year>2011</Year><Month>08</Month><Day>02</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2259</ISSN><JournalIssue CitedMedium="Internet"><Volume>180</Volume><Issue>6</Issue><PubDate><Year>2011</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Plant science : an international journal of experimental plant biology</Title><ISOAbbreviation>Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Differentially expressed genes in Populus simonii x Populus nigra in response to NaCl stress using cDNA-AFLP.</ArticleTitle><Pagination><MedlinePgn>796-801</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.plantsci.2011.02.001</ELocationID><Abstract><AbstractText>Salinity is an important environmental factor limiting growth and productivity of plants, and affects almost every aspect of the plant physiology and biochemistry. The objective of this study was to apply cDNA-AFLP and to identify differentially expressed genes in response to NaCl stress vs. no-stress in Populus simonii x Populus nigra in order to develop genetic resources for genetic improvement. Selective amplification with 64 primer combinations allowed the visualization of 4407 transcript-derived fragments (TDFs), and 2027 were differentially expressed. Overall, 107 TDFs were re-sequenced successfully, and 86 unique sequences were identified in 10 functional categories based on their putative functions. A subset of these genes was selected for real-time PCR validation, which confirmed the differential expression patterns in the leaf tissues under NaCl stress vs. no stress. Differential expressed genes will be studied further for association with salt or drought-tolerance in P. simonii x P. nigra. This study suggests that cDNA-AFLP is a useful tool to serve as an initial step for characterizing transcriptional changes induced by NaCl salinity stress in P. simonii x P. nigra and provides resources for further study and application in genetic improvement and breeding. All unique sequences have been deposited in the Genbank as accession numbers GW672587-GW672672 for public use.</AbstractText><CopyrightInformation>Copyright © 2011 Elsevier Ireland Ltd. 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